Transcript: Human NM_178523.5

Homo sapiens zinc finger protein 616 (ZNF616), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
ZNF616 (90317)
Length:
4356
CDS:
284..2629

Additional Resources:

NCBI RefSeq record:
NM_178523.5
NBCI Gene record:
ZNF616 (90317)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_178523.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000218091 ACGGAGAAGACAGGTAATAAT pLKO_005 779 CDS 100% 15.000 10.500 N ZNF616 n/a
2 TRCN0000230006 AGCGTCTTCCAGCCTTATTAA pLKO_005 868 CDS 100% 15.000 10.500 N ZNF616 n/a
3 TRCN0000230008 TTTCTGGAATCACCGAATAAT pLKO_005 2642 3UTR 100% 15.000 10.500 N ZNF616 n/a
4 TRCN0000230007 CCTCACTAAACATCGAATAAG pLKO_005 2560 CDS 100% 13.200 9.240 N ZNF616 n/a
5 TRCN0000218535 GCATTCAGACATAGATCAAAT pLKO_005 1364 CDS 100% 13.200 9.240 N ZNF616 n/a
6 TRCN0000183173 GAAAGACATCAAAGCTATGAT pLKO.1 506 CDS 100% 5.625 3.938 N ZNF616 n/a
7 TRCN0000179733 GCAAGGCATTCAGACATAGAT pLKO.1 1359 CDS 100% 5.625 3.938 N ZNF616 n/a
8 TRCN0000147633 GTCTACAGTCAGTATTCACAT pLKO.1 2036 CDS 100% 4.950 3.465 N ZNF616 n/a
9 TRCN0000148128 GTGGAATTGTAATCTCCAGTA pLKO.1 2713 3UTR 100% 4.050 2.430 N ZNF616 n/a
10 TRCN0000021815 CCGGAGAGAAACCTTACAAAT pLKO.1 2166 CDS 100% 13.200 6.600 Y ZNF253 n/a
11 TRCN0000430520 TCACTAGGCATCAGAATATAC pLKO_005 3408 3UTR 100% 13.200 6.600 Y ZNF677 n/a
12 TRCN0000151709 CAAATGTAATGAGTGTGGCAA pLKO.1 1258 CDS 100% 2.640 1.320 Y ZNF320 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178523.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.