Transcript: Mouse NM_178728.5

Mus musculus N-acyl phosphatidylethanolamine phospholipase D (Napepld), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Napepld (242864)
Length:
3673
CDS:
158..1348

Additional Resources:

NCBI RefSeq record:
NM_178728.5
NBCI Gene record:
Napepld (242864)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_178728.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000249629 TCTAGAGAGATACGGACTTTC pLKO_005 1249 CDS 100% 10.800 15.120 N Napepld n/a
2 TRCN0000249630 CAGCGCCAAGCTATCAGTATC pLKO_005 186 CDS 100% 10.800 8.640 N Napepld n/a
3 TRCN0000249628 AGTCTAGGGATGGGTTATTTA pLKO_005 1494 3UTR 100% 15.000 10.500 N Napepld n/a
4 TRCN0000249631 ATACTTGAATACCGATGATAG pLKO_005 1309 CDS 100% 10.800 7.560 N Napepld n/a
5 TRCN0000249632 GGACGTTTGCCTTAGCTAATG pLKO_005 1191 CDS 100% 10.800 7.560 N Napepld n/a
6 TRCN0000166364 CACACACACACACACACACAA pLKO.1 1705 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178728.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.