Transcript: Mouse NM_178804.5

Mus musculus slit homolog 2 (Drosophila) (Slit2), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Slit2 (20563)
Length:
9958
CDS:
1886..6451

Additional Resources:

NCBI RefSeq record:
NM_178804.5
NBCI Gene record:
Slit2 (20563)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_178804.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000328178 CTTGACCATGTTGGACTAATT pLKO_005 6496 3UTR 100% 13.200 18.480 N Slit2 n/a
2 TRCN0000328114 GAACGGATAAGGGACTATTAC pLKO_005 6227 CDS 100% 13.200 18.480 N Slit2 n/a
3 TRCN0000120818 GCCCAGTGTATCATCAGGATA pLKO.1 5261 CDS 100% 4.950 6.930 N Slit2 n/a
4 TRCN0000120817 GCTACCAGTTTCCAGTATTAA pLKO.1 7068 3UTR 100% 15.000 10.500 N Slit2 n/a
5 TRCN0000328094 GCTGGAAAGACTGCGTTTAAA pLKO_005 2197 CDS 100% 15.000 10.500 N Slit2 n/a
6 TRCN0000120820 GCCTGTCAAACAACTAAGAAA pLKO.1 6269 CDS 100% 5.625 3.938 N Slit2 n/a
7 TRCN0000328112 GCCTGTCAAACAACTAAGAAA pLKO_005 6269 CDS 100% 5.625 3.938 N Slit2 n/a
8 TRCN0000120821 GCCTTGTCACACTTAGCGATT pLKO.1 4409 CDS 100% 4.050 2.835 N Slit2 n/a
9 TRCN0000328111 GCCTTGTCACACTTAGCGATT pLKO_005 4409 CDS 100% 4.050 2.835 N Slit2 n/a
10 TRCN0000120819 GCCAACAAGATAAACTGCCTT pLKO.1 3026 CDS 100% 2.640 1.848 N Slit2 n/a
11 TRCN0000056308 CCTGGAGAAATGGCAGATAAA pLKO.1 4526 CDS 100% 13.200 7.920 N SLIT2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178804.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.