Transcript: Mouse NM_178873.3

Mus musculus aarF domain containing kinase 2 (Adck2), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Adck2 (57869)
Length:
3539
CDS:
426..2279

Additional Resources:

NCBI RefSeq record:
NM_178873.3
NBCI Gene record:
Adck2 (57869)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_178873.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000361755 CAAAGCGTTCGCTAGTATTTC pLKO_005 1070 CDS 100% 13.200 18.480 N Adck2 n/a
2 TRCN0000023854 GCCCTTTATGAAAGACCGGAA pLKO.1 1169 CDS 100% 2.160 3.024 N Adck2 n/a
3 TRCN0000023855 CCCAAATTAATCTCAGCCCAT pLKO.1 567 CDS 100% 2.160 1.728 N Adck2 n/a
4 TRCN0000023858 CCAGTGGCAGTGAAAGTATTA pLKO.1 1317 CDS 100% 13.200 9.240 N Adck2 n/a
5 TRCN0000361812 CCCTCATCACTAGGGATATTC pLKO_005 1570 CDS 100% 13.200 9.240 N Adck2 n/a
6 TRCN0000023857 CCTCCTATCCAGTGTCTTTAA pLKO.1 2099 CDS 100% 13.200 9.240 N Adck2 n/a
7 TRCN0000361814 GGTGTGCTCTTGGCGAAATTC pLKO_005 735 CDS 100% 13.200 9.240 N Adck2 n/a
8 TRCN0000361813 TAAGCTACTGATGACCCATAA pLKO_005 2117 CDS 100% 10.800 7.560 N Adck2 n/a
9 TRCN0000023856 CTAGGGATATTCTGGTGGAAA pLKO.1 1579 CDS 100% 4.950 3.465 N Adck2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178873.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.