Transcript: Mouse NM_178935.5

Mus musculus taxilin gamma (Txlng), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Txlng (353170)
Length:
3876
CDS:
115..1689

Additional Resources:

NCBI RefSeq record:
NM_178935.5
NBCI Gene record:
Txlng (353170)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_178935.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000197450 CCTCTGTTAGTAGTAACTATT pLKO.1 1737 3UTR 100% 13.200 18.480 N Txlng n/a
2 TRCN0000177423 GCAGATATAGTTTGTGCTAAA pLKO.1 3676 3UTR 100% 10.800 15.120 N Txlng n/a
3 TRCN0000177913 CAGCGTCATAATAAGACCTTA pLKO.1 760 CDS 100% 4.950 6.930 N Txlng n/a
4 TRCN0000198650 CAAGCTCAGTTGGAACAACAT pLKO.1 868 CDS 100% 4.950 3.960 N Txlng n/a
5 TRCN0000181588 GCAGACATGGTATGTAACTCT pLKO.1 268 CDS 100% 3.000 2.400 N Txlng n/a
6 TRCN0000279430 ACTCATAAAGTAGTCCTAATA pLKO_005 2173 3UTR 100% 13.200 9.240 N Txlng n/a
7 TRCN0000279502 ATTACTGATGCAAGCGCTAAA pLKO_005 534 CDS 100% 10.800 7.560 N Txlng n/a
8 TRCN0000177054 GTAACTCTCAAGCAAATGATA pLKO.1 281 CDS 100% 5.625 3.938 N Txlng n/a
9 TRCN0000278692 GTAACTCTCAAGCAAATGATA pLKO_005 281 CDS 100% 5.625 3.938 N Txlng n/a
10 TRCN0000181783 GCACAATGGAAGAAGCTAGAA pLKO.1 227 CDS 100% 4.950 3.465 N Txlng n/a
11 TRCN0000279429 GCACAATGGAAGAAGCTAGAA pLKO_005 227 CDS 100% 4.950 3.465 N Txlng n/a
12 TRCN0000198753 CGCAGAAGTTTGAAATTGGCA pLKO.1 209 CDS 100% 0.750 0.525 N Txlng n/a
13 TRCN0000128404 GCAGCTCTCTGTAAGAAATAT pLKO.1 583 CDS 100% 15.000 9.000 N TXLNGY n/a
14 TRCN0000279431 CACTAAGGGAAGAGCATATTG pLKO_005 965 CDS 100% 13.200 7.920 N Txlng n/a
15 TRCN0000182349 GAGAAGGTCGAAGTCCTGAAA pLKO.1 1462 CDS 100% 4.950 2.970 N Txlng n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_178935.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.