Transcript: Human NM_181492.2

Homo sapiens transcription factor 20 (TCF20), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-06-18
Taxon:
Homo sapiens (human)
Gene:
TCF20 (6942)
Length:
7199
CDS:
37..5853

Additional Resources:

NCBI RefSeq record:
NM_181492.2
NBCI Gene record:
TCF20 (6942)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_181492.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000015492 GCACAGGCTTATGGAACACAA pLKO.1 877 CDS 100% 4.950 6.930 N TCF20 n/a
2 TRCN0000297821 GCACAGGCTTATGGAACACAA pLKO_005 877 CDS 100% 4.950 6.930 N TCF20 n/a
3 TRCN0000280379 TTCCGATGACAAGTGAAATTT pLKO_005 6238 3UTR 100% 15.000 12.000 N TCF20 n/a
4 TRCN0000015491 GCTAGTTTCAACAACAAGAAA pLKO.1 2854 CDS 100% 5.625 4.500 N TCF20 n/a
5 TRCN0000280429 GCTAGTTTCAACAACAAGAAA pLKO_005 2854 CDS 100% 5.625 4.500 N TCF20 n/a
6 TRCN0000015490 CGCTTGATGATATACTGTCTT pLKO.1 4178 CDS 100% 4.950 3.465 N TCF20 n/a
7 TRCN0000280378 CGCTTGATGATATACTGTCTT pLKO_005 4178 CDS 100% 4.950 3.465 N TCF20 n/a
8 TRCN0000015488 CGTGATTCTTTATGTTGTGTT pLKO.1 6939 3UTR 100% 4.950 3.465 N TCF20 n/a
9 TRCN0000015489 GCCACAGAAATGCAGAGCAAA pLKO.1 5260 CDS 100% 4.950 3.465 N TCF20 n/a
10 TRCN0000280427 GCCACAGAAATGCAGAGCAAA pLKO_005 5260 CDS 100% 4.950 3.465 N TCF20 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_181492.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.