Transcript: Mouse NM_183111.2

Mus musculus RIKEN cDNA 4930563M21 gene (4930563M21Rik), mRNA.

Source:
NCBI, updated 2015-04-30
Taxon:
Mus musculus (mouse)
Gene:
4930563M21Rik (75258)
Length:
792
CDS:
45..638

Additional Resources:

NCBI RefSeq record:
NM_183111.2
NBCI Gene record:
4930563M21Rik (75258)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_183111.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000217451 GCACACCTTTGAACTTGATAC pLKO.1 476 CDS 100% 10.800 15.120 N 4930563M21Rik n/a
2 TRCN0000181590 GATGGCAAATCGTCACTAGTT pLKO.1 177 CDS 100% 0.000 0.000 N 4930563M21Rik n/a
3 TRCN0000181486 CCATTCCTAACTTGGAGAGAT pLKO.1 564 CDS 100% 4.950 3.465 N 4930563M21Rik n/a
4 TRCN0000177990 GCACTGATGATGATTTGGATA pLKO.1 358 CDS 100% 4.950 3.465 N 4930563M21Rik n/a
5 TRCN0000182800 CCTATACAGGAGGACAAGGAT pLKO.1 531 CDS 100% 3.000 2.100 N 4930563M21Rik n/a
6 TRCN0000198887 GATCATGTGGATGATGACGAT pLKO.1 381 CDS 100% 0.264 0.185 N 4930563M21Rik n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_183111.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.