Transcript: Mouse NM_198417.2

Mus musculus zinc finger protein 607B (Zfp607b), transcript variant 2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zfp607b (112415)
Length:
4628
CDS:
229..2175

Additional Resources:

NCBI RefSeq record:
NM_198417.2
NBCI Gene record:
Zfp607b (112415)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_198417.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000095602 TGCTGATGAAAGGGTTACTAA pLKO.1 663 CDS 100% 5.625 3.938 N Zfp607b n/a
2 TRCN0000095600 CCACACTATTCATACTGGAAA pLKO.1 1971 CDS 100% 4.950 3.465 N Zfp607b n/a
3 TRCN0000095601 CCAGAGATTTCATAGTGGTAA pLKO.1 1635 CDS 100% 4.950 2.970 N Zfp607b n/a
4 TRCN0000095599 CGGGCGTTACTGTAATGGAAA pLKO.1 3952 3UTR 100% 4.950 2.970 N Zfp607b n/a
5 TRCN0000095603 CCGTACCAACTCACTCAACAT pLKO.1 2035 CDS 100% 4.950 2.475 Y Zfp607b n/a
6 TRCN0000106535 GCCTGGTCTACAAAGTGAGTT pLKO.1 2569 3UTR 100% 4.950 2.475 Y Gad2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_198417.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.