Transcript: Human NM_198445.4

Homo sapiens Ras and Rab interactor like (RINL), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
RINL (126432)
Length:
3042
CDS:
410..1768

Additional Resources:

NCBI RefSeq record:
NM_198445.4
NBCI Gene record:
RINL (126432)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_198445.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000160338 CACATGCTAACAAACCATATA pLKO.1 2548 3UTR 100% 13.200 18.480 N RINL n/a
2 TRCN0000161025 GCTGGACGTAGAGTTTCTTAT pLKO.1 1486 CDS 100% 13.200 18.480 N RINL n/a
3 TRCN0000161859 GAAGGTGCTTTCCATTGTGAA pLKO.1 559 CDS 100% 4.950 3.465 N RINL n/a
4 TRCN0000159236 CAAAGAATGTATCACATGCTA pLKO.1 2536 3UTR 100% 3.000 2.100 N RINL n/a
5 TRCN0000162232 CGTAGAGTTTCTTATGGAGCT pLKO.1 1492 CDS 100% 2.160 1.512 N RINL n/a
6 TRCN0000163219 GCTTTCCATTGTGAACCAGCT pLKO.1 565 CDS 100% 2.160 1.512 N RINL n/a
7 TRCN0000163218 GAGGTGTGCAGAGATGTCTAT pLKO.1 1361 CDS 100% 4.950 2.970 N RINL n/a
8 TRCN0000163681 GACCTTGAAGGAAAGGAGGAA pLKO.1 779 CDS 100% 2.640 1.584 N RINL n/a
9 TRCN0000164177 CAGCCTGACAAACATGGAGAA pLKO.1 2713 3UTR 100% 4.050 2.025 Y RINL n/a
10 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 2648 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_198445.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.