Transcript: Mouse NM_201609.2

Mus musculus zinc finger protein 652 (Zfp652), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Zfp652 (268469)
Length:
2668
CDS:
185..2011

Additional Resources:

NCBI RefSeq record:
NM_201609.2
NBCI Gene record:
Zfp652 (268469)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_201609.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000216452 GCATGCAGATCTGTGATAAAT pLKO.1 990 CDS 100% 15.000 21.000 N Zfp652 n/a
2 TRCN0000187880 GCAGATCATAGTGGAGGTAAA pLKO.1 526 CDS 100% 10.800 8.640 N Zfp652 n/a
3 TRCN0000278523 TAGTGGAGGTAAACCTTAATA pLKO_005 534 CDS 100% 15.000 10.500 N ZNF652 n/a
4 TRCN0000187341 CCTGTCCACCAAAGTGTATAA pLKO.1 319 CDS 100% 13.200 9.240 N Zfp652 n/a
5 TRCN0000187739 GCAAGAAGTTTGTCCTGGAAA pLKO.1 1014 CDS 100% 4.950 3.465 N Zfp652 n/a
6 TRCN0000189004 GCAGACACCAAGATGAGCAAA pLKO.1 371 CDS 100% 4.950 3.465 N Zfp652 n/a
7 TRCN0000187165 CCAGTTCAGAAAGCTAAGTGT pLKO.1 878 CDS 100% 3.000 2.100 N Zfp652 n/a
8 TRCN0000188593 GAGCAGATCATAGTGGAGGTA pLKO.1 524 CDS 100% 2.640 1.848 N Zfp652 n/a
9 TRCN0000413960 CACACTGGAGAGAAGCCTTAC pLKO_005 1484 CDS 100% 6.000 3.000 Y Zfp612 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_201609.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.