Transcript: Human NM_203459.3

Homo sapiens calmodulin regulated spectrin associated protein family member 2 (CAMSAP2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
CAMSAP2 (23271)
Length:
7338
CDS:
257..4693

Additional Resources:

NCBI RefSeq record:
NM_203459.3
NBCI Gene record:
CAMSAP2 (23271)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_203459.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000364586 TTGTCAGATTAGAGGATATTT pLKO_005 1029 CDS 100% 15.000 21.000 N CAMSAP2 n/a
2 TRCN0000364663 ATCGCTGAACACGGGTGATAA pLKO_005 4099 CDS 100% 13.200 18.480 N CAMSAP2 n/a
3 TRCN0000166929 CCAGGATATGTAACTCTTATA pLKO.1 6318 3UTR 100% 13.200 10.560 N CAMSAP2 n/a
4 TRCN0000369395 AGGTTCACCTGCTTGATATTA pLKO_005 4941 3UTR 100% 15.000 10.500 N CAMSAP2 n/a
5 TRCN0000364661 GCAAGTCACTGGCAGATATAA pLKO_005 2748 CDS 100% 15.000 10.500 N CAMSAP2 n/a
6 TRCN0000168227 CGAGGAATCACTCGTTCTATT pLKO.1 1592 CDS 100% 13.200 9.240 N CAMSAP2 n/a
7 TRCN0000369396 CTATGCTGCTTCATCCATAAA pLKO_005 1162 CDS 100% 13.200 9.240 N CAMSAP2 n/a
8 TRCN0000369318 GACATGGATGATGCATCTAAA pLKO_005 2171 CDS 100% 13.200 9.240 N CAMSAP2 n/a
9 TRCN0000167780 GCACCTTTCTTATGATGTTAA pLKO.1 5194 3UTR 100% 13.200 9.240 N CAMSAP2 n/a
10 TRCN0000167594 GCATTGAAGAAGCATTACAAA pLKO.1 1878 CDS 100% 5.625 3.938 N CAMSAP2 n/a
11 TRCN0000168344 GCCAAACATTTGTCGTGGTTA pLKO.1 7004 3UTR 100% 4.950 3.465 N CAMSAP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_203459.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.