Transcript: Mouse NM_207204.2

Mus musculus ninein-like (Ninl), mRNA.

Source:
NCBI, updated 2017-04-15
Taxon:
Mus musculus (mouse)
Gene:
Ninl (78177)
Length:
5104
CDS:
180..4364

Additional Resources:

NCBI RefSeq record:
NM_207204.2
NBCI Gene record:
Ninl (78177)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_207204.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000114695 CCTGAACGATTATGAGCTTAA pLKO.1 1826 CDS 100% 10.800 15.120 N Ninl n/a
2 TRCN0000114694 GCTCTGTAGTATAGATGCCAT pLKO.1 2942 CDS 100% 2.640 3.696 N Ninl n/a
3 TRCN0000364672 GGTTAACTTTGAGGAATTTAA pLKO_005 362 CDS 100% 15.000 10.500 N NINL n/a
4 TRCN0000114692 CCCTTGACAATGAACTGCTAA pLKO.1 1261 CDS 100% 4.950 3.465 N Ninl n/a
5 TRCN0000114691 GCAAAGAACAATGGAGAGAAA pLKO.1 4630 3UTR 100% 4.950 3.465 N Ninl n/a
6 TRCN0000114693 GCCCTTGACAATGAACTGCTA pLKO.1 1260 CDS 100% 2.640 1.848 N Ninl n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_207204.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.