Transcript: Human NM_207411.5

Homo sapiens XK related 5 (XKR5), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
XKR5 (389610)
Length:
4773
CDS:
32..2092

Additional Resources:

NCBI RefSeq record:
NM_207411.5
NBCI Gene record:
XKR5 (389610)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_207411.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000157474 GATGAAGCAAGAGCCGAGTTT pLKO.1 2062 CDS 100% 4.950 6.930 N XKR5 n/a
2 TRCN0000157643 CTAAGTCACCATGCAGCTGTT pLKO.1 1937 CDS 100% 4.050 5.670 N XKR5 n/a
3 TRCN0000157437 GAGGACTCTTTCCTCAGTCAT pLKO.1 1217 CDS 100% 0.495 0.693 N XKR5 n/a
4 TRCN0000155865 CCTAAGTCTGAGTCTATCCAA pLKO.1 2018 CDS 100% 3.000 2.400 N XKR5 n/a
5 TRCN0000158089 CTTAGAGAACAGCTCTGCGTT pLKO.1 1423 CDS 100% 2.640 2.112 N XKR5 n/a
6 TRCN0000154763 GCAGTGTCTCACTGGTAATTT pLKO.1 951 CDS 100% 15.000 10.500 N XKR5 n/a
7 TRCN0000156404 CACCTGCTGCTTCAGACATAT pLKO.1 401 CDS 100% 13.200 9.240 N XKR5 n/a
8 TRCN0000154717 GCCTCAGACTTCACAGATATT pLKO.1 431 CDS 100% 13.200 9.240 N XKR5 n/a
9 TRCN0000154693 GAGATAACAGTCCTGCCTATT pLKO.1 1305 CDS 100% 10.800 7.560 N XKR5 n/a
10 TRCN0000157307 CTGGTGATGACATTCTGGCTT pLKO.1 680 CDS 100% 2.640 1.848 N XKR5 n/a
11 TRCN0000157015 GCTTACTACTTCACCACAGGA pLKO.1 104 CDS 100% 2.640 1.848 N XKR5 n/a
12 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3419 3UTR 100% 5.625 2.813 Y KLHL30 n/a
13 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3419 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_207411.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.