Transcript: Human NM_213600.4

Homo sapiens phospholipase A2 group IVF (PLA2G4F), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
PLA2G4F (255189)
Length:
5587
CDS:
88..2637

Additional Resources:

NCBI RefSeq record:
NM_213600.4
NBCI Gene record:
PLA2G4F (255189)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_213600.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000253903 CCCGTGAGTGCTATCTGTTTG pLKO_005 2315 CDS 100% 10.800 15.120 N PLA2G4F n/a
2 TRCN0000253905 ACTTCCGCCCAGAGCTTTAAC pLKO_005 1978 CDS 100% 13.200 9.240 N PLA2G4F n/a
3 TRCN0000253906 CCAGGCTGTGCTGGACATATT pLKO_005 1944 CDS 100% 13.200 9.240 N PLA2G4F n/a
4 TRCN0000253904 GGGAAACCTACCCATACTATG pLKO_005 200 CDS 100% 10.800 7.560 N PLA2G4F n/a
5 TRCN0000253907 TTCTCTTCCCAGCGCCCTAAA pLKO_005 3239 3UTR 100% 10.800 7.560 N PLA2G4F n/a
6 TRCN0000180717 GCTGCTTCAGAAGAGAGAGAA pLKO.1 150 CDS 100% 4.950 2.970 N PLA2G4F n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_213600.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.