Transcript: Mouse NR_028499.1

Mus musculus FXYD domain-containing ion transport regulator 2 (Fxyd2), transcript variant c, non-coding RNA.

Source:
NCBI, updated 2018-06-03
Taxon:
Mus musculus (mouse)
Gene:
Fxyd2 (11936)
Length:
773
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_028499.1
NBCI Gene record:
Fxyd2 (11936)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_028499.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000079304 CCCTTCGAGTACGACTATGAA pLKO.1 322 3UTR 100% 5.625 7.875 N Fxyd2 n/a
2 TRCN0000079307 CGACTATGAAACCGTCCGCAA pLKO.1 333 3UTR 100% 2.160 3.024 N Fxyd2 n/a
3 TRCN0000432603 CGCAAAGGAGGCCTGATCTTC pLKO_005 349 3UTR 100% 1.650 1.320 N Fxyd2 n/a
4 TRCN0000419363 AGATGAACTGTGACAGAAGAG pLKO_005 459 3UTR 100% 4.050 2.835 N Fxyd2 n/a
5 TRCN0000079305 GACAGAGAATCCCTTCGAGTA pLKO.1 312 3UTR 100% 4.050 2.835 N Fxyd2 n/a
6 TRCN0000426904 TCGTGGGCCTCCTCATCATTC pLKO_005 386 3UTR 100% 3.600 2.520 N Fxyd2 n/a
7 TRCN0000079306 GTAAGAAACATAGGCAGGTCA pLKO.1 434 3UTR 100% 2.640 1.848 N Fxyd2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_028499.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.