Transcript: Mouse NR_030764.1

Mus musculus RIKEN cDNA 2700097O09 gene (2700097O09Rik), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
2700097O09Rik (72658)
Length:
1187
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_030764.1
NBCI Gene record:
2700097O09Rik (72658)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_030764.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000264277 CAGCGCCTTTGGGATTTATTT pLKO_005 380 3UTR 100% 15.000 10.500 N 2700097O09Rik n/a
2 TRCN0000264276 AGTTGCAGGAAATGATCATAA pLKO_005 657 3UTR 100% 13.200 9.240 N 2700097O09Rik n/a
3 TRCN0000264278 GATGAATTTACTCACGATAAT pLKO_005 139 3UTR 100% 13.200 9.240 N 2700097O09Rik n/a
4 TRCN0000264279 TGGAACTACATCATCCATAAT pLKO_005 818 3UTR 100% 13.200 9.240 N 2700097O09Rik n/a
5 TRCN0000282964 GATGAGGACTACCCGGGATTT pLKO_005 117 3UTR 100% 10.800 7.560 N 2700097O09Rik n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_030764.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.