Transcript: Human NR_034053.2

Homo sapiens transportin 3 (TNPO3), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-09-10
Taxon:
Homo sapiens (human)
Gene:
TNPO3 (23534)
Length:
4583
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_034053.2
NBCI Gene record:
TNPO3 (23534)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_034053.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000038331 CGGCGCACAGAAATTATAGAA pLKO.1 1057 3UTR 100% 5.625 7.875 N TNPO3 n/a
2 TRCN0000291605 CGGCGCACAGAAATTATAGAA pLKO_005 1057 3UTR 100% 5.625 7.875 N TNPO3 n/a
3 TRCN0000038330 CCTCAATATGAGGTAGTAGAA pLKO.1 1564 3UTR 100% 4.950 6.930 N TNPO3 n/a
4 TRCN0000291604 CCTCAATATGAGGTAGTAGAA pLKO_005 1564 3UTR 100% 4.950 6.930 N TNPO3 n/a
5 TRCN0000038329 CCTATCTTACAGTGGGCCATT pLKO.1 2887 3UTR 100% 4.050 5.670 N TNPO3 n/a
6 TRCN0000038332 CGAGCTGATAATCGGATTGTA pLKO.1 2521 3UTR 100% 5.625 4.500 N TNPO3 n/a
7 TRCN0000296949 ACCAGACTGTGTCCCACAATC pLKO_005 3407 3UTR 100% 10.800 7.560 N TNPO3 n/a
8 TRCN0000038333 CCGATTACCTTTGGATAAGAT pLKO.1 2274 3UTR 100% 5.625 3.938 N TNPO3 n/a
9 TRCN0000307728 CCGATTACCTTTGGATAAGAT pLKO_005 2274 3UTR 100% 5.625 3.938 N TNPO3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_034053.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.