Transcript: Mouse NR_045963.1

Mus musculus predicted gene 1976 (Gm1976), transcript variant 1, long non-coding RNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Gm1976 (100038746)
Length:
1912
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_045963.1
NBCI Gene record:
Gm1976 (100038746)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_045963.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000218344 CAATTGGGAAGACCATCATAT pLKO_005 113 3UTR 100% 13.200 6.600 Y EG666715 n/a
2 TRCN0000095133 GAAGACATGAAAGGCATGAAA pLKO.1 157 3UTR 100% 5.625 2.813 Y 2610044O15Rik8 n/a
3 TRCN0000243782 TGGAGAGAAACCCTATGAATA pLKO_005 188 3UTR 100% 13.200 6.600 Y Zfp977 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_045963.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.