Transcript: Human NR_046079.1

Homo sapiens semaphorin 5B (SEMA5B), transcript variant 5, non-coding RNA.

Source:
NCBI, updated 2018-05-12
Taxon:
Homo sapiens (human)
Gene:
SEMA5B (54437)
Length:
4728
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_046079.1
NBCI Gene record:
SEMA5B (54437)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_046079.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000060475 CAGGCTTTCAATGGCCCATTT pLKO.1 1386 3UTR 100% 10.800 7.560 N SEMA5B n/a
2 TRCN0000094860 CCGGACTATTGAGAAGATCAA pLKO.1 848 3UTR 100% 4.950 3.465 N Sema5b n/a
3 TRCN0000060476 CTTGCCAATGTCTCTCTTCTT pLKO.1 648 3UTR 100% 4.950 3.465 N SEMA5B n/a
4 TRCN0000060473 GCCTATGATATTGGGCTGTTT pLKO.1 1065 3UTR 100% 4.950 3.465 N SEMA5B n/a
5 TRCN0000060474 CGGACTATTGAGAAGATCAAT pLKO.1 849 3UTR 100% 0.563 0.394 N SEMA5B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_046079.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.