Transcript: Human NR_047564.2

Homo sapiens crumbs cell polarity complex component 1 (CRB1), transcript variant 6, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
CRB1 (23418)
Length:
5200
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_047564.2
NBCI Gene record:
CRB1 (23418)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_047564.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000055770 GCTCTGCTTAACTTCTATAAT pLKO.1 2037 3UTR 100% 15.000 12.000 N CRB1 n/a
2 TRCN0000055768 CCACAATTATTCTGGTGTAAA pLKO.1 800 3UTR 100% 13.200 9.240 N CRB1 n/a
3 TRCN0000055769 GCCCATTTGATAACCTTTCTA pLKO.1 1429 3UTR 100% 5.625 3.938 N CRB1 n/a
4 TRCN0000055771 GCTGGAAGATTCTGTGAGATA pLKO.1 582 3UTR 100% 4.950 3.465 N CRB1 n/a
5 TRCN0000055772 CGTATGAATGACGAGCCAGTT pLKO.1 4242 3UTR 100% 4.050 2.835 N CRB1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_047564.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.