Transcript: Human NR_104417.1

Homo sapiens LYR motif containing 4 (LYRM4), transcript variant 4, non-coding RNA.

Source:
NCBI, updated 2019-08-13
Taxon:
Homo sapiens (human)
Gene:
LYRM4 (57128)
Length:
1861
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_104417.1
NBCI Gene record:
LYRM4 (57128)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_104417.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000064087 GATCATTGAGAATCGAGACAT pLKO.1 807 3UTR 100% 4.950 3.960 N LYRM4 n/a
2 TRCN0000286894 GATCATTGAGAATCGAGACAT pLKO_005 807 3UTR 100% 4.950 3.960 N LYRM4 n/a
3 TRCN0000064083 GCCTACAATTACAGAACATAT pLKO.1 290 3UTR 100% 13.200 9.240 N LYRM4 n/a
4 TRCN0000298262 GCCTACAATTACAGAACATAT pLKO_005 290 3UTR 100% 13.200 9.240 N LYRM4 n/a
5 TRCN0000294363 TGTAAAGGATCCTGTAGAAAT pLKO_005 352 3UTR 100% 13.200 9.240 N LYRM4 n/a
6 TRCN0000294335 GACCATTGTGTATAGCATTTC pLKO_005 1123 3UTR 100% 10.800 7.560 N LYRM4 n/a
7 TRCN0000294307 CTGAGAGAGAGCAAGCGTTTC pLKO_005 266 3UTR 100% 6.000 4.200 N LYRM4 n/a
8 TRCN0000064084 CCAACTGTATTCAACTGACAA pLKO.1 783 3UTR 100% 4.950 3.465 N LYRM4 n/a
9 TRCN0000064086 CAGGAGGATAAGAGATGCCTT pLKO.1 316 3UTR 100% 2.640 1.848 N LYRM4 n/a
10 TRCN0000064085 CCAAGAGAGACCTTGGAGTAA pLKO.1 393 3UTR 100% 0.495 0.297 N LYRM4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_104417.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.