Transcript: Human NR_136281.2

Homo sapiens SID1 transmembrane family member 1 (SIDT1), transcript variant 11, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
SIDT1 (54847)
Length:
4778
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_136281.2
NBCI Gene record:
SIDT1 (54847)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_136281.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000435069 TCGCCCTCTTTGGATTGATAT pLKO_005 2517 3UTR 100% 13.200 18.480 N SIDT1 n/a
2 TRCN0000141623 CGAGCAGTTCTTCGTGGTATT pLKO.1 1209 3UTR 100% 10.800 15.120 N SIDT1 n/a
3 TRCN0000415343 ACGTGGACTCAGTTATCATTA pLKO_005 1054 3UTR 100% 13.200 9.240 N SIDT1 n/a
4 TRCN0000141920 CCGGACCAAGATGTTCCTTTA pLKO.1 1740 3UTR 100% 10.800 7.560 N SIDT1 n/a
5 TRCN0000122484 CGAGTGCATTCTGCTGGATTT pLKO.1 2767 3UTR 100% 10.800 7.560 N SIDT1 n/a
6 TRCN0000142012 GCACCGAGAACATCTACTCTT pLKO.1 643 3UTR 100% 4.950 3.465 N SIDT1 n/a
7 TRCN0000142601 GTGACCATTGTCCCTTCCATT pLKO.1 1327 3UTR 100% 4.950 3.465 N SIDT1 n/a
8 TRCN0000074123 CGCCTGTAATCCCAACACTTT pLKO.1 4612 3UTR 100% 4.950 2.475 Y GJD4 n/a
9 TRCN0000166650 CGCCTGTAATCCCAACACTTT pLKO.1 4612 3UTR 100% 4.950 2.475 Y C9orf85 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_136281.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.