Transcript: Human NR_145425.1

Homo sapiens RUSC1 antisense RNA 1 (RUSC1-AS1), transcript variant 2, long non-coding RNA.

Source:
NCBI, updated 2019-08-09
Taxon:
Homo sapiens (human)
Gene:
RUSC1-AS1 (284618)
Length:
1521
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_145425.1
NBCI Gene record:
RUSC1-AS1 (284618)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_145425.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000159603 GCTGCTACTTTATATCTGTAT pLKO.1 480 3UTR 100% 4.950 3.465 N RUSC1-AS1 n/a
2 TRCN0000163648 GCAGCTAGAAAGAGTGGAATA pLKO.1 414 3UTR 100% 10.800 6.480 N RUSC1-AS1 n/a
3 TRCN0000166108 GATCTGGTACTGTTCTGGAGT pLKO.1 101 3UTR 100% 2.640 1.320 Y RUSC1-AS1 n/a
4 TRCN0000163829 CCTCCCAAATTACTGGGATTA pLKO.1 759 3UTR 100% 1.080 0.540 Y RUSC1-AS1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_145425.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.