Transcript: Human NR_146182.2

Homo sapiens nei like DNA glycosylase 2 (NEIL2), transcript variant 11, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
NEIL2 (252969)
Length:
1802
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_146182.2
NBCI Gene record:
NEIL2 (252969)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_146182.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000416753 TCAGAGGTGCCAGTAGTATAA pLKO_005 837 3UTR 100% 13.200 18.480 N NEIL2 n/a
2 TRCN0000422034 GACGTCTAAGTGTCCAGAAAG pLKO_005 776 3UTR 100% 10.800 7.560 N NEIL2 n/a
3 TRCN0000064014 GCTAGGGAACATCATTAAGAA pLKO.1 415 3UTR 100% 5.625 3.938 N NEIL2 n/a
4 TRCN0000439244 ACGTGGTGGAGTTCAGTACAG pLKO_005 519 3UTR 100% 4.050 2.835 N NEIL2 n/a
5 TRCN0000064016 CATCATTAAGAATGAAGCCTT pLKO.1 424 3UTR 100% 2.640 1.848 N NEIL2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_146182.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.