Transcript: Human NR_157088.2

Homo sapiens clathrin light chain B (CLTB), transcript variant 6, non-coding RNA.

Source:
NCBI, updated 2019-07-15
Taxon:
Homo sapiens (human)
Gene:
CLTB (1212)
Length:
1737
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_157088.2
NBCI Gene record:
CLTB (1212)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_157088.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000055993 GCTGCATCTAAGGTCACGGAA pLKO.1 1083 3UTR 100% 2.640 3.696 N CLTB n/a
2 TRCN0000380912 GAGCTGGATGCTGCATCTAAG pLKO_005 1074 3UTR 100% 10.800 7.560 N CLTB n/a
3 TRCN0000055996 AGCAGCAAGCAGTGCAAAGAT pLKO.1 1341 3UTR 100% 5.625 3.938 N CLTB n/a
4 TRCN0000290246 AGCAGCAAGCAGTGCAAAGAT pLKO_005 1341 3UTR 100% 5.625 3.938 N CLTB n/a
5 TRCN0000055997 AGTAGAGAAGAACAAGATCAA pLKO.1 1166 3UTR 100% 4.950 3.465 N CLTB n/a
6 TRCN0000055995 GCTGATGGCTACGCAGCCATT pLKO.1 978 3UTR 100% 0.135 0.095 N CLTB n/a
7 TRCN0000310296 AGAGCGAGATTGCAGGCATAG pLKO_005 271 3UTR 100% 6.000 3.600 N CLTB n/a
8 TRCN0000055994 AGGAGGCTTTCGTGAAGGAAT pLKO.1 1255 3UTR 100% 4.950 2.970 N CLTB n/a
9 TRCN0000290172 AGGAGGCTTTCGTGAAGGAAT pLKO_005 1255 3UTR 100% 4.950 2.970 N CLTB n/a
10 TRCN0000308263 CACAGTCAATGGAGATGTGTT pLKO_005 386 3UTR 100% 4.950 2.970 N CLTB n/a
11 TRCN0000310232 AGCTGCTACCCACAGCCTATT pLKO_005 1506 3UTR 100% 10.800 5.400 Y CLTB n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_157088.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.