Transcript: Human XM_005245955.3

PREDICTED: Homo sapiens RAP1 GTPase activating protein (RAP1GAP), transcript variant X11, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RAP1GAP (5909)
Length:
3311
CDS:
271..2316

Additional Resources:

NCBI RefSeq record:
XM_005245955.3
NBCI Gene record:
RAP1GAP (5909)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005245955.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000296344 ACTTCAAGTTTGGCGTCATTT pLKO_005 845 CDS 100% 13.200 9.240 N RAP1GAP n/a
2 TRCN0000296343 AGCACAAGGAGGATGTGATAT pLKO_005 2723 3UTR 100% 13.200 9.240 N RAP1GAP n/a
3 TRCN0000296404 GGTCAAACTGCAGGACTTTAA pLKO_005 960 CDS 100% 13.200 9.240 N RAP1GAP n/a
4 TRCN0000073363 CCTGCCTTAGAAGGTAGGATT pLKO.1 2898 3UTR 100% 4.950 3.465 N RAP1GAP n/a
5 TRCN0000073364 GCTTTCGTGGAGTTCCTTGAA pLKO.1 925 CDS 100% 4.950 3.465 N RAP1GAP n/a
6 TRCN0000333800 GCTTTCGTGGAGTTCCTTGAA pLKO_005 925 CDS 100% 4.950 3.465 N RAP1GAP n/a
7 TRCN0000073365 CAATGCTGAATATGCCTGCTA pLKO.1 1380 CDS 100% 2.640 1.848 N RAP1GAP n/a
8 TRCN0000222545 CCACCTTGTCTTCTCACTCAA pLKO.1 600 CDS 100% 4.950 2.970 N RAP1GAP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005245955.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.