Transcript: Human XM_005246111.4

PREDICTED: Homo sapiens period circadian regulator 2 (PER2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PER2 (8864)
Length:
6328
CDS:
224..3991

Additional Resources:

NCBI RefSeq record:
XM_005246111.4
NBCI Gene record:
PER2 (8864)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005246111.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000018541 CCACGAGAATGAAATCCGCTA pLKO.1 1060 CDS 100% 2.160 3.024 N PER2 n/a
2 TRCN0000330732 CCACGAGAATGAAATCCGCTA pLKO_005 1060 CDS 100% 2.160 3.024 N PER2 n/a
3 TRCN0000330810 CCAGCTGCCTTCCCGAAATTT pLKO_005 3676 CDS 100% 15.000 10.500 N PER2 n/a
4 TRCN0000018538 GCATCCATATTTCACTGTAAA pLKO.1 857 CDS 100% 13.200 9.240 N PER2 n/a
5 TRCN0000330808 GTGTTTGGATCAGATCAAATT pLKO_005 4387 3UTR 100% 13.200 9.240 N PER2 n/a
6 TRCN0000330809 TGACCAGGTTGCATCCATATT pLKO_005 847 CDS 100% 13.200 9.240 N PER2 n/a
7 TRCN0000018539 GCCAGAGTCCAGATACCTTTA pLKO.1 447 CDS 100% 10.800 7.560 N PER2 n/a
8 TRCN0000330731 GCCAGAGTCCAGATACCTTTA pLKO_005 447 CDS 100% 10.800 7.560 N PER2 n/a
9 TRCN0000018542 GACACACACAAAGAACTGATA pLKO.1 539 CDS 100% 4.950 3.465 N PER2 n/a
10 TRCN0000018540 CCAAATTGTTTGTTCCAGGAT pLKO.1 1238 CDS 100% 2.640 1.848 N PER2 n/a
11 TRCN0000165534 GAGACAGGGTTTCACCATGTT pLKO.1 5487 3UTR 100% 4.950 2.475 Y n/a
12 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 5560 3UTR 100% 5.625 2.813 Y KLHL30 n/a
13 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 5560 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005246111.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.