Transcript: Human XM_005247413.2

PREDICTED: Homo sapiens homogentisate 1,2-dioxygenase (HGD), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HGD (3081)
Length:
1708
CDS:
445..1461

Additional Resources:

NCBI RefSeq record:
XM_005247413.2
NBCI Gene record:
HGD (3081)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005247413.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000284753 CAGGTGGTTACACGGTCATTA pLKO_005 1163 CDS 100% 13.200 18.480 N HGD n/a
2 TRCN0000076361 CTTCTCATTTACACCGAGTTT pLKO.1 931 CDS 100% 4.950 3.465 N Hgd n/a
3 TRCN0000272473 TGTCCACGGAGCACCAATAAG pLKO_005 595 CDS 100% 13.200 7.920 N HGD n/a
4 TRCN0000000190 CGTGATTTCTTGATACCCATT pLKO.1 1117 CDS 100% 4.050 2.430 N HGD n/a
5 TRCN0000000192 ACAAGTACAACCTGAAGAATT pLKO.1 1268 CDS 100% 0.000 0.000 N HGD n/a
6 TRCN0000272472 ACAAGTACAACCTGAAGAATT pLKO_005 1268 CDS 100% 0.000 0.000 N HGD n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005247413.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.