Transcript: Human XM_005248139.3

PREDICTED: Homo sapiens transmembrane anterior posterior transformation 1 (TAPT1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TAPT1 (202018)
Length:
3617
CDS:
274..1599

Additional Resources:

NCBI RefSeq record:
XM_005248139.3
NBCI Gene record:
TAPT1 (202018)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005248139.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000433407 CAAATGTCAAATAGCGATATT pLKO_005 796 CDS 100% 13.200 18.480 N TAPT1 n/a
2 TRCN0000137636 GCCACCGTGAATGGAATAGTT pLKO.1 3349 3UTR 100% 5.625 7.875 N TAPT1 n/a
3 TRCN0000134168 CTATGTTGACTACTCCATGAT pLKO.1 426 CDS 100% 4.950 6.930 N TAPT1 n/a
4 TRCN0000136644 GCGTACATACATAGGCAGAAA pLKO.1 3042 3UTR 100% 4.950 6.930 N TAPT1 n/a
5 TRCN0000442272 GCACGGAGGATGGGCTTTATT pLKO_005 1090 CDS 100% 15.000 10.500 N TAPT1 n/a
6 TRCN0000419489 ATATCCCTGAAAGTACTTAAT pLKO_005 1213 CDS 100% 13.200 9.240 N TAPT1 n/a
7 TRCN0000428522 TCAGAAATTGCCGTGGATATT pLKO_005 937 CDS 100% 13.200 9.240 N TAPT1 n/a
8 TRCN0000413685 ACATAATGAGGCCAAGTATAC pLKO_005 269 5UTR 100% 10.800 7.560 N TAPT1 n/a
9 TRCN0000429816 CCATCACCAAACAACCTATTC pLKO_005 1400 CDS 100% 10.800 7.560 N TAPT1 n/a
10 TRCN0000430410 GTATACACTTGTTTGCGAATA pLKO_005 306 CDS 100% 10.800 7.560 N TAPT1 n/a
11 TRCN0000137005 CCACCGTGAATGGAATAGTTT pLKO.1 3350 3UTR 100% 5.625 3.938 N TAPT1 n/a
12 TRCN0000136711 GCACTATGTTGACTACTCCAT pLKO.1 423 CDS 100% 2.640 1.848 N TAPT1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005248139.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.