Transcript: Human XM_005248758.5

PREDICTED: Homo sapiens BTB domain and CNC homolog 2 (BACH2), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BACH2 (60468)
Length:
15534
CDS:
7021..9654

Additional Resources:

NCBI RefSeq record:
XM_005248758.5
NBCI Gene record:
BACH2 (60468)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005248758.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000421127 AGCACCTCGGTGCATTCTTAT pLKO_005 8452 CDS 100% 13.200 18.480 N BACH2 n/a
2 TRCN0000433722 TGACGAATCCGGATCGTTCTC pLKO_005 8898 CDS 100% 4.050 5.670 N BACH2 n/a
3 TRCN0000018113 CCGGGAAGATAACTCTAGCAA pLKO.1 7899 CDS 100% 3.000 4.200 N BACH2 n/a
4 TRCN0000018117 GCCCAGGAAAGATTATACCTA pLKO.1 9633 CDS 100% 3.000 4.200 N BACH2 n/a
5 TRCN0000018114 CGCAAATTGGTGTGTGAGAAA pLKO.1 9163 CDS 100% 4.950 3.960 N BACH2 n/a
6 TRCN0000423629 TGGCCGCATGCAGTGAATATT pLKO_005 7292 CDS 100% 15.000 10.500 N BACH2 n/a
7 TRCN0000436687 ATTAAATGTGAGCAGTCTTAT pLKO_005 8863 CDS 100% 13.200 9.240 N BACH2 n/a
8 TRCN0000429903 CATCTGCTGTCCCGAAGAAAC pLKO_005 9727 3UTR 100% 10.800 7.560 N BACH2 n/a
9 TRCN0000413240 TCGAGCAGGAGTGATAGTTAC pLKO_005 9818 3UTR 100% 10.800 7.560 N BACH2 n/a
10 TRCN0000418256 TGCACACTACAGCGGTCTTAG pLKO_005 9763 3UTR 100% 10.800 7.560 N BACH2 n/a
11 TRCN0000420508 ATGTCGAGATGGACCGGAAAC pLKO_005 8045 CDS 100% 6.000 4.200 N BACH2 n/a
12 TRCN0000084328 GCTTCTATACACATCAAAGTT pLKO.1 10041 3UTR 100% 5.625 3.938 N Bach2 n/a
13 TRCN0000417909 AGAAGGAGGTGTCCAACTTCA pLKO_005 8324 CDS 100% 4.950 3.465 N BACH2 n/a
14 TRCN0000415724 ATATTCTCTGTGACGTGACTT pLKO_005 7229 CDS 100% 4.950 3.465 N BACH2 n/a
15 TRCN0000420196 CACAGTCCACTGCACCAACAT pLKO_005 7176 CDS 100% 4.950 3.465 N BACH2 n/a
16 TRCN0000018115 CCAGCTTGCATGTACCAAGAA pLKO.1 7830 CDS 100% 4.950 3.465 N BACH2 n/a
17 TRCN0000018116 CCTGTAGATCAAATCACAGAT pLKO.1 8980 CDS 100% 4.950 3.465 N BACH2 n/a
18 TRCN0000428556 TCAGAACAGTTAGAGTTTATT pLKO_005 9049 CDS 100% 15.000 9.000 N BACH2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005248758.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.