Transcript: Human XM_005254034.3

PREDICTED: Homo sapiens dedicator of cytokinesis 9 (DOCK9), transcript variant X20, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DOCK9 (23348)
Length:
7463
CDS:
45..6326

Additional Resources:

NCBI RefSeq record:
XM_005254034.3
NBCI Gene record:
DOCK9 (23348)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005254034.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000142216 GACTGGCATCTTGTGAACTAT pLKO.1 402 CDS 100% 5.625 7.875 N DOCK9 n/a
2 TRCN0000141621 CCAAAGTTAAGTTGCTGCGAA pLKO.1 2980 CDS 100% 2.640 3.696 N DOCK9 n/a
3 TRCN0000144498 CCTTAGGAAACGAACTTGTAA pLKO.1 2575 CDS 100% 5.625 4.500 N DOCK9 n/a
4 TRCN0000142185 GCCTTAGGAAACGAACTTGTA pLKO.1 2574 CDS 100% 4.950 3.960 N DOCK9 n/a
5 TRCN0000122687 GCGGTAAACGAACGTCTGATT pLKO.1 6096 CDS 100% 4.950 3.960 N DOCK9 n/a
6 TRCN0000140732 GCTTCCGAACAAAGTGGTCAA pLKO.1 455 CDS 100% 4.050 3.240 N DOCK9 n/a
7 TRCN0000139678 CCAACAGTGACCGGCTTATTA pLKO.1 4774 CDS 100% 15.000 10.500 N DOCK9 n/a
8 TRCN0000141047 CGCGAGCTTTCTTAGATGATA pLKO.1 5989 CDS 100% 5.625 3.938 N DOCK9 n/a
9 TRCN0000142706 CCAACATTGCTACTGAGGTTT pLKO.1 4294 CDS 100% 4.950 3.465 N DOCK9 n/a
10 TRCN0000142217 GCAGAATATCTCACACGGAAA pLKO.1 5049 CDS 100% 4.050 2.835 N DOCK9 n/a
11 TRCN0000122134 GCTGTTCCAGTATATGCAATA pLKO.1 7121 3UTR 100% 10.800 6.480 N DOCK9 n/a
12 TRCN0000140165 GTACCAGTGAACCAGGAGATT pLKO.1 6834 3UTR 100% 0.000 0.000 N DOCK9 n/a
13 TRCN0000253067 TAAATCTCACTGGCAATATTT pLKO_005 6516 3UTR 100% 15.000 10.500 N Dock9 n/a
14 TRCN0000253069 TTGGCGATGGATCCTATAATC pLKO_005 664 CDS 100% 13.200 9.240 N Dock9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005254034.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.