Transcript: Human XM_005254038.5

PREDICTED: Homo sapiens SLIT and NTRK like family member 5 (SLITRK5), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLITRK5 (26050)
Length:
5217
CDS:
987..3863

Additional Resources:

NCBI RefSeq record:
XM_005254038.5
NBCI Gene record:
SLITRK5 (26050)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005254038.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000303816 GGCAATAGCCTCCCGGAATAT pLKO_005 3597 CDS 100% 13.200 18.480 N SLITRK5 n/a
2 TRCN0000078705 GCGTCATTGAACCCAATGCTT pLKO.1 1483 CDS 100% 0.300 0.420 N SLITRK5 n/a
3 TRCN0000299724 GCGTCATTGAACCCAATGCTT pLKO_005 1483 CDS 100% 0.300 0.420 N SLITRK5 n/a
4 TRCN0000078707 GCATCGCCTATCAGACCAAAT pLKO.1 2068 CDS 100% 10.800 8.640 N SLITRK5 n/a
5 TRCN0000303815 GTGCAGAAACCATCGATTATT pLKO_005 1096 CDS 100% 15.000 10.500 N SLITRK5 n/a
6 TRCN0000364200 TGCAGAAACCATCGATTATTA pLKO_005 1097 CDS 100% 15.000 10.500 N Slitrk5 n/a
7 TRCN0000078703 CGTGGGAAACATTTGTGTAAA pLKO.1 4043 3UTR 100% 13.200 9.240 N SLITRK5 n/a
8 TRCN0000310494 CGTGGGAAACATTTGTGTAAA pLKO_005 4043 3UTR 100% 13.200 9.240 N SLITRK5 n/a
9 TRCN0000079181 GCTGCTATTCTTGAATAACAA pLKO.1 2510 CDS 100% 5.625 3.938 N Slitrk5 n/a
10 TRCN0000078706 CCGTCTCTATCCCAATGAGTT pLKO.1 1268 CDS 100% 4.950 3.465 N SLITRK5 n/a
11 TRCN0000222739 CGGAACGAATATCTGGAGTTA pLKO.1 3771 CDS 100% 4.950 3.465 N SLITRK5 n/a
12 TRCN0000310762 GAGTACCTACAGGTCGATTAC pLKO_005 1452 CDS 100% 10.800 6.480 N SLITRK5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005254038.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.