Transcript: Human XM_005255812.2

PREDICTED: Homo sapiens CYLD lysine 63 deubiquitinase (CYLD), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CYLD (1540)
Length:
8664
CDS:
376..3237

Additional Resources:

NCBI RefSeq record:
XM_005255812.2
NBCI Gene record:
CYLD (1540)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005255812.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000230281 CCTGGAGGATTAGGGTATTTA pLKO_005 3910 3UTR 100% 15.000 21.000 N CYLD n/a
2 TRCN0000039632 GCGCTGTAACTCTTTAGCATT pLKO.1 2034 CDS 100% 4.950 6.930 N CYLD n/a
3 TRCN0000218454 AGGTTCATCCAGTCATAATAA pLKO_005 1353 CDS 100% 15.000 10.500 N CYLD n/a
4 TRCN0000230278 GAGGACAGTCTCCGGAATATT pLKO_005 840 CDS 100% 15.000 10.500 N CYLD n/a
5 TRCN0000230280 TACTTAGACTCAACCTTATTC pLKO_005 2170 CDS 100% 13.200 9.240 N CYLD n/a
6 TRCN0000230279 TCTATTGCACATCAATGATAT pLKO_005 1260 CDS 100% 13.200 9.240 N CYLD n/a
7 TRCN0000039631 CCCACAATTCAGCAGTTGTTA pLKO.1 2548 CDS 100% 5.625 3.938 N CYLD n/a
8 TRCN0000039629 GCAGCGTTACAGACAAACAAA pLKO.1 458 CDS 100% 5.625 3.938 N CYLD n/a
9 TRCN0000039630 GCCCAATACCAATGGAAGTAT pLKO.1 1644 CDS 100% 5.625 3.938 N CYLD n/a
10 TRCN0000039628 CCCATTAAATTCAGTGTAGTT pLKO.1 4194 3UTR 100% 4.950 3.465 N CYLD n/a
11 TRCN0000018366 GAAGAAGGTCGTGGTCAAGGT pLKO.1 880 CDS 100% 2.640 1.848 N CYLD n/a
12 TRCN0000010488 CATCTTCAGATGTTGGTATCT pLKO.1 5249 3UTR 100% 4.950 2.970 N CYLD n/a
13 TRCN0000010487 TATATGTGCATGTACCAGAGT pLKO.1 3193 CDS 100% 2.640 1.584 N CYLD n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005255812.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.