Transcript: Human XM_005259174.5

PREDICTED: Homo sapiens zinc finger and SCAN domain containing 18 (ZSCAN18), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZSCAN18 (65982)
Length:
2569
CDS:
186..1718

Additional Resources:

NCBI RefSeq record:
XM_005259174.5
NBCI Gene record:
ZSCAN18 (65982)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005259174.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000232308 TCGCGTGTGTTTACCTATATG pLKO_005 2216 3UTR 100% 13.200 18.480 N ZSCAN18 n/a
2 TRCN0000232307 AGAGAAGCAAAGACCGAAGAG pLKO_005 783 CDS 100% 4.050 5.670 N ZSCAN18 n/a
3 TRCN0000016638 CGGGCTCATCCTCAATTCTTA pLKO.1 610 CDS 100% 5.625 4.500 N ZSCAN18 n/a
4 TRCN0000016640 TGGAAAGAGATCCACAAGGAA pLKO.1 991 CDS 100% 3.000 2.400 N ZSCAN18 n/a
5 TRCN0000016642 CGCGTGGCTCTCGCACCTGAT pLKO.1 1451 CDS 100% 0.000 0.000 N ZSCAN18 n/a
6 TRCN0000232306 GGGCTCATCCTCAATTCTTAG pLKO_005 611 CDS 100% 10.800 7.560 N ZSCAN18 n/a
7 TRCN0000016639 CGCCTGCGTTTCCGGGAATTT pLKO.1 330 CDS 100% 4.400 3.080 N ZSCAN18 n/a
8 TRCN0000232304 CGCCTGCGTTTCCGGGAATTT pLKO_005 330 CDS 100% 4.400 3.080 N ZSCAN18 n/a
9 TRCN0000016641 GCACCAGAAGACCCACGAGAA pLKO.1 1559 CDS 100% 1.350 0.945 N ZSCAN18 n/a
10 TRCN0000232305 GTACCCTGAGAGCTGCAAGAA pLKO_005 521 CDS 100% 0.000 0.000 N ZSCAN18 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005259174.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.