Transcript: Human XM_005259571.4

PREDICTED: Homo sapiens zinc finger and BTB domain containing 7A (ZBTB7A), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZBTB7A (51341)
Length:
5338
CDS:
1050..2804

Additional Resources:

NCBI RefSeq record:
XM_005259571.4
NBCI Gene record:
ZBTB7A (51341)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005259571.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000137891 GAACGTGTACGAGATCGACTT pLKO.1 1265 CDS 100% 4.050 5.670 N ZBTB7A n/a
2 TRCN0000138142 GAAGCACTTTAAGGACGAGGA pLKO.1 2654 CDS 100% 2.160 3.024 N ZBTB7A n/a
3 TRCN0000136852 CCGTTTGCATATGCAATGCTA pLKO.1 4825 3UTR 100% 0.000 0.000 N ZBTB7A n/a
4 TRCN0000138671 GCCACTGAGACACAAACCTAT pLKO.1 3458 3UTR 100% 4.950 3.960 N ZBTB7A n/a
5 TRCN0000137332 GCTGGACCTTGTAGATCAAAT pLKO.1 1475 CDS 100% 13.200 9.240 N ZBTB7A n/a
6 TRCN0000136851 CCACTGAGACACAAACCTATT pLKO.1 3459 3UTR 100% 10.800 7.560 N ZBTB7A n/a
7 TRCN0000271681 ACTACTACCTGAAGTACTTCA pLKO_005 2098 CDS 100% 4.950 3.465 N Zbtb7a n/a
8 TRCN0000136520 CCAGTACTTCAAGAAGCTGTT pLKO.1 1217 CDS 100% 4.050 2.835 N ZBTB7A n/a
9 TRCN0000138519 CCAGGAGAAGCACTTTAAGGA pLKO.1 2648 CDS 100% 3.000 2.100 N ZBTB7A n/a
10 TRCN0000138084 GCAACGGCTTAGACTTCTATG pLKO.1 1690 CDS 100% 10.800 6.480 N ZBTB7A n/a
11 TRCN0000137998 GCAGAAGGTGGAGAAGAAGAT pLKO.1 2156 CDS 100% 4.950 2.970 N ZBTB7A n/a
12 TRCN0000138716 GCCAGTACTTCAAGAAGCTGT pLKO.1 1216 CDS 100% 2.640 1.584 N ZBTB7A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005259571.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.