Transcript: Human XM_005266605.3

PREDICTED: Homo sapiens TBC1 domain family member 4 (TBC1D4), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TBC1D4 (9882)
Length:
5620
CDS:
148..3501

Additional Resources:

NCBI RefSeq record:
XM_005266605.3
NBCI Gene record:
TBC1D4 (9882)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005266605.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000241615 AGTGCCAAGACGCAGATTAAA pLKO_005 937 CDS 100% 15.000 12.000 N Tbc1d4 n/a
2 TRCN0000146664 CCTAACAACAAAGCCAAGATA pLKO.1 3466 CDS 100% 5.625 4.500 N TBC1D4 n/a
3 TRCN0000148287 CCAAATTGTGAGTGCTTGTAA pLKO.1 4435 3UTR 100% 5.625 3.938 N TBC1D4 n/a
4 TRCN0000147574 GCTTTGATGAACAGATGACAA pLKO.1 5026 3UTR 100% 4.950 3.465 N TBC1D4 n/a
5 TRCN0000148115 GAGGTCTTAATAACTTGGGAT pLKO.1 2266 CDS 100% 2.640 1.848 N TBC1D4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005266605.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.