Transcript: Human XM_005269664.2

PREDICTED: Homo sapiens lysine acetyltransferase 6B (KAT6B), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KAT6B (23522)
Length:
8561
CDS:
763..6984

Additional Resources:

NCBI RefSeq record:
XM_005269664.2
NBCI Gene record:
KAT6B (23522)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005269664.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000222165 CCCAAACGTATGCGTCGTAAA pLKO.1 2464 CDS 100% 10.800 15.120 N KAT6B n/a
2 TRCN0000222166 GCACGGACTTTAACGATGCAA pLKO.1 6628 CDS 100% 3.000 4.200 N KAT6B n/a
3 TRCN0000039342 CCATTAAGTAACACAGGGCTT pLKO.1 6316 CDS 100% 2.160 3.024 N Kat6b n/a
4 TRCN0000287463 CCATTAAGTAACACAGGGCTT pLKO_005 6316 CDS 100% 2.160 3.024 N Kat6b n/a
5 TRCN0000245348 GATATTAGAAGTCGGTTTATT pLKO_005 2536 CDS 100% 15.000 10.500 N KAT6B n/a
6 TRCN0000245349 TTGACAGACGGAAGGATTAAA pLKO_005 2719 CDS 100% 15.000 10.500 N KAT6B n/a
7 TRCN0000245347 ACCGCAGTACAGGGTCAATTA pLKO_005 1269 CDS 100% 13.200 9.240 N KAT6B n/a
8 TRCN0000245350 CTCGAACCCAGAGGTCTTAAT pLKO_005 5166 CDS 100% 13.200 9.240 N KAT6B n/a
9 TRCN0000222164 CCCTTGTAGAAACAATATGAA pLKO.1 4416 CDS 100% 5.625 3.938 N KAT6B n/a
10 TRCN0000222163 GCTGTGAATAATGGGAGGTTA pLKO.1 1237 CDS 100% 4.950 3.465 N KAT6B n/a
11 TRCN0000222167 CCACCTACATTTCTGCCTCTA pLKO.1 2012 CDS 100% 4.050 2.835 N KAT6B n/a
12 TRCN0000245351 ATGGAAATGCCTCTAACTTTA pLKO_005 7856 3UTR 100% 13.200 7.920 N KAT6B n/a
13 TRCN0000039341 CCCACAGGAATATGCAAGATT pLKO.1 2976 CDS 100% 5.625 2.813 Y Kat6b n/a
14 TRCN0000287461 CCCACAGGAATATGCAAGATT pLKO_005 2976 CDS 100% 5.625 2.813 Y Kat6b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005269664.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.