Transcript: Human XM_005274040.3

PREDICTED: Homo sapiens phosphodiesterase 2A (PDE2A), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PDE2A (5138)
Length:
4133
CDS:
68..2890

Additional Resources:

NCBI RefSeq record:
XM_005274040.3
NBCI Gene record:
PDE2A (5138)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005274040.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000048777 GAAACTGTCTACACCTACCTA pLKO.1 299 CDS 100% 3.000 4.200 N PDE2A n/a
2 TRCN0000048775 CGCCCATTCTCTCCTATACAA pLKO.1 1708 CDS 100% 5.625 4.500 N PDE2A n/a
3 TRCN0000413507 CTGCAACATCTTTGATCATTT pLKO_005 2290 CDS 100% 13.200 9.240 N PDE2A n/a
4 TRCN0000415360 CTGAACATCCCTGACGCATAT pLKO_005 1490 CDS 100% 10.800 7.560 N PDE2A n/a
5 TRCN0000417079 CTTTCCAGGTGGCCTCGAAAT pLKO_005 2181 CDS 100% 10.800 7.560 N PDE2A n/a
6 TRCN0000048773 GCGGAGCTGATCTACAAAGAA pLKO.1 2531 CDS 100% 5.625 3.938 N PDE2A n/a
7 TRCN0000048776 CCAGAAGGAACAGAAACTCAA pLKO.1 1213 CDS 100% 4.950 3.465 N PDE2A n/a
8 TRCN0000048774 GCAGGACATGAATTTCATCAA pLKO.1 1933 CDS 100% 4.950 3.465 N PDE2A n/a
9 TRCN0000114977 GCCAATGAGATGATGATGTAT pLKO.1 1763 CDS 100% 5.625 3.938 N Pde2a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005274040.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.