Transcript: Human XM_005274738.2

PREDICTED: Homo sapiens zinc finger protein 185 with LIM domain (ZNF185), transcript variant X17, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF185 (7739)
Length:
4423
CDS:
153..2222

Additional Resources:

NCBI RefSeq record:
XM_005274738.2
NBCI Gene record:
ZNF185 (7739)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005274738.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000108024 AGCCAGTATCTGCACGCTATA pLKO.1 1924 CDS 100% 10.800 15.120 N ZNF185 n/a
2 TRCN0000108021 CCAAAGATTACCCTAGAACAT pLKO.1 2070 CDS 100% 4.950 3.465 N ZNF185 n/a
3 TRCN0000108020 CCCATCTTAGACATGAGGATA pLKO.1 3135 3UTR 100% 4.950 3.465 N ZNF185 n/a
4 TRCN0000108022 TGTCCAAAGATTACCCTAGAA pLKO.1 2067 CDS 100% 4.950 3.465 N ZNF185 n/a
5 TRCN0000108023 CCCTGCTGATAGGAAGAGCAA pLKO.1 1298 CDS 100% 2.640 1.848 N ZNF185 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005274738.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.