Transcript: Human XM_005277509.3

PREDICTED: Homo sapiens eukaryotic translation initiation factor 2D (EIF2D), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
EIF2D (1939)
Length:
1862
CDS:
125..1729

Additional Resources:

NCBI RefSeq record:
XM_005277509.3
NBCI Gene record:
EIF2D (1939)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005277509.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000244848 GGACGACAACTGGACATAAAG pLKO_005 1034 CDS 100% 13.200 18.480 N EIF2D n/a
2 TRCN0000063058 CCTAGCACAAAGAGCGTCTAA pLKO.1 1456 CDS 100% 4.950 6.930 N EIF2D n/a
3 TRCN0000063059 CGTCATTAACTACGCCAAGAA pLKO.1 1216 CDS 100% 4.950 6.930 N EIF2D n/a
4 TRCN0000244849 ATGCAGCAGGAGCAGATTATA pLKO_005 1094 CDS 100% 15.000 10.500 N EIF2D n/a
5 TRCN0000244852 CTAGCACAAAGAGCGTCTAAT pLKO_005 1457 CDS 100% 13.200 9.240 N EIF2D n/a
6 TRCN0000244851 GGTCCGAACGATCGTCATTAA pLKO_005 1204 CDS 100% 13.200 9.240 N EIF2D n/a
7 TRCN0000063060 CCCTTTACTCACCAGCACTTT pLKO.1 979 CDS 100% 4.950 3.465 N EIF2D n/a
8 TRCN0000063062 CCTGATCTTCTGCCAACCTTT pLKO.1 392 CDS 100% 4.950 3.465 N EIF2D n/a
9 TRCN0000063061 GTGAAGTTGTATGCTCACAAA pLKO.1 275 CDS 100% 4.950 3.465 N EIF2D n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005277509.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.