Transcript: Mouse XM_006495494.3

PREDICTED: Mus musculus transcription factor AP-2 beta (Tfap2b), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tfap2b (21419)
Length:
3577
CDS:
242..1630

Additional Resources:

NCBI RefSeq record:
XM_006495494.3
NBCI Gene record:
Tfap2b (21419)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006495494.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000095425 GCCGTTTATCTCTACTCAGTT pLKO.1 972 CDS 100% 4.950 6.930 N Tfap2b n/a
2 TRCN0000095428 CTGTTCACTTAGCTCGGGATT pLKO.1 1215 CDS 100% 4.050 5.670 N Tfap2b n/a
3 TRCN0000095424 CCGGCTACATTTATCTGATAA pLKO.1 2214 3UTR 100% 13.200 10.560 N Tfap2b n/a
4 TRCN0000416400 CTAAAGCCGTGTCCGAGTATT pLKO_005 1266 CDS 100% 13.200 9.240 N Tfap2b n/a
5 TRCN0000095426 CCTTGAGAGAAAGGCTAGAAA pLKO.1 1116 CDS 100% 5.625 3.938 N Tfap2b n/a
6 TRCN0000095427 GTTCTTGAACAACACCACTAA pLKO.1 1561 CDS 100% 4.950 3.465 N Tfap2b n/a
7 TRCN0000019662 CAGTCAGTTGAAGATGCCAAT pLKO.1 806 CDS 100% 4.050 2.835 N TFAP2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006495494.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.