Transcript: Mouse XM_006495627.2

PREDICTED: Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), member 4 (Slc9a4), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slc9a4 (110895)
Length:
2149
CDS:
794..2044

Additional Resources:

NCBI RefSeq record:
XM_006495627.2
NBCI Gene record:
Slc9a4 (110895)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006495627.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000068142 CGTTTATGGAACTGGTTACTA pLKO.1 821 CDS 100% 5.625 4.500 N Slc9a4 n/a
2 TRCN0000068140 CCTGCTACACAATCTGCTATT pLKO.1 1369 CDS 100% 10.800 7.560 N Slc9a4 n/a
3 TRCN0000068139 CGGCATCATATTTGGATTCAT pLKO.1 1633 CDS 100% 5.625 3.938 N Slc9a4 n/a
4 TRCN0000068141 CCAGACATCATACACGACCAT pLKO.1 1825 CDS 100% 2.640 1.848 N Slc9a4 n/a
5 TRCN0000437787 AGAGCTTCACAGCCGTCTTAT pLKO_005 2063 3UTR 100% 13.200 7.920 N Slc9a4 n/a
6 TRCN0000148278 CGTCTTCATGTTCAGCTATTT pLKO.1 1708 CDS 100% 13.200 10.560 N SLC9A4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006495627.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.