Transcript: Mouse XM_006496307.3

PREDICTED: Mus musculus WD repeat domain 75 (Wdr75), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Wdr75 (73674)
Length:
2220
CDS:
370..2127

Additional Resources:

NCBI RefSeq record:
XM_006496307.3
NBCI Gene record:
Wdr75 (73674)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006496307.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000253313 TCTTGATGCATCGGCAGTAAT pLKO_005 1326 CDS 100% 13.200 18.480 N Wdr75 n/a
2 TRCN0000253312 CTAGTTAAAGATAGGAGTATA pLKO_005 1354 CDS 100% 0.000 0.000 N Wdr75 n/a
3 TRCN0000215864 CCTCGATTAGGATCTTCTATT pLKO.1 1225 CDS 100% 13.200 10.560 N Wdr75 n/a
4 TRCN0000215786 CACTTCAAAGTGTGGATATTA pLKO.1 1771 CDS 100% 15.000 10.500 N Wdr75 n/a
5 TRCN0000253311 CTCCGTGGATTCCAAGTATAT pLKO_005 438 CDS 100% 13.200 9.240 N Wdr75 n/a
6 TRCN0000265365 CATCAATGATGAGGGTCTAAC pLKO_005 1503 CDS 100% 10.800 7.560 N Wdr75 n/a
7 TRCN0000190522 GCTGTTGGAATCTGCTCAGTT pLKO.1 2063 CDS 100% 4.950 3.465 N Wdr75 n/a
8 TRCN0000151800 CCAGATATATTTCAGCTGGTT pLKO.1 736 CDS 100% 2.640 1.848 N WDR75 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006496307.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.