Transcript: Mouse XM_006497005.1

PREDICTED: Mus musculus DDB1 and CUL4 associated factor 6 (Dcaf6), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Dcaf6 (74106)
Length:
3456
CDS:
327..3017

Additional Resources:

NCBI RefSeq record:
XM_006497005.1
NBCI Gene record:
Dcaf6 (74106)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006497005.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000239166 GTTGGCGTCACTGAATCATAT pLKO_005 2924 CDS 100% 13.200 18.480 N Dcaf6 n/a
2 TRCN0000239167 GACAGCTCAGTACGGATTTAT pLKO_005 963 CDS 100% 15.000 12.000 N Dcaf6 n/a
3 TRCN0000239165 GGTTCCATCAAGTCCTAATTT pLKO_005 1481 CDS 100% 15.000 10.500 N Dcaf6 n/a
4 TRCN0000239164 TGGAATGGTTGCTCGATTTAT pLKO_005 1040 CDS 100% 15.000 10.500 N Dcaf6 n/a
5 TRCN0000239163 TGAGATTTGTATACGACATTT pLKO_005 3047 3UTR 100% 13.200 9.240 N Dcaf6 n/a
6 TRCN0000129155 GAGCATTTGATGCTTCTGGAA pLKO.1 2688 CDS 100% 2.640 1.848 N DCAF6 n/a
7 TRCN0000344155 GAGCATTTGATGCTTCTGGAA pLKO_005 2688 CDS 100% 2.640 1.848 N DCAF6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006497005.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.