Transcript: Mouse XM_006499062.3

PREDICTED: Mus musculus serine protease inhibitor, Kunitz type 1 (Spint1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Spint1 (20732)
Length:
2338
CDS:
242..1765

Additional Resources:

NCBI RefSeq record:
XM_006499062.3
NBCI Gene record:
Spint1 (20732)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006499062.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000079947 TCTGCATCATAGTGGTCTTAA pLKO.1 1596 CDS 100% 13.200 9.240 N Spint1 n/a
2 TRCN0000079946 CCCAAGGAACAGATCTGCAAA pLKO.1 1031 CDS 100% 4.950 3.465 N Spint1 n/a
3 TRCN0000079944 CCTGGGCAACAAGAACAACTA pLKO.1 1072 CDS 100% 4.950 3.465 N Spint1 n/a
4 TRCN0000079945 CCAAGCAGACAGAAGATTATT pLKO.1 951 CDS 100% 15.000 9.000 N Spint1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006499062.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.