Transcript: Mouse XM_006499809.2

PREDICTED: Mus musculus preferentially expressed antigen in melanoma like 6 (Pramel6), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Pramel6 (347711)
Length:
1873
CDS:
331..1788

Additional Resources:

NCBI RefSeq record:
XM_006499809.2
NBCI Gene record:
Pramel6 (347711)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006499809.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000183092 CAAACCTGCTTGAAGTGTTTA pLKO.1 1702 CDS 100% 13.200 18.480 N Pramel6 n/a
2 TRCN0000183571 GTCAGCTTCTGTCATAATGAT pLKO.1 1486 CDS 100% 5.625 7.875 N Pramel6 n/a
3 TRCN0000215445 GAGGATTACAAGATACTTAAA pLKO.1 1600 CDS 100% 13.200 10.560 N Pramel6 n/a
4 TRCN0000216044 CTAATGTCATAGAGATCTTTA pLKO.1 911 CDS 100% 13.200 9.240 N Pramel6 n/a
5 TRCN0000215970 CTTTGAAGACCTTGTCAATTA pLKO.1 1220 CDS 100% 13.200 9.240 N Pramel6 n/a
6 TRCN0000179791 GTCACAAGTACCCTGCAAATT pLKO.1 1381 CDS 100% 13.200 9.240 N Pramel6 n/a
7 TRCN0000178974 CCTTCACTGATAGGCATACAA pLKO.1 458 CDS 100% 5.625 3.938 N Pramel6 n/a
8 TRCN0000196143 GCAGTGCTTGATGGGTTGAAT pLKO.1 568 CDS 100% 5.625 3.938 N Pramel6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006499809.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.