Transcript: Mouse XM_006500381.3

PREDICTED: Mus musculus breast carcinoma amplified sequence 1 (Bcas1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Bcas1 (76960)
Length:
3082
CDS:
171..2132

Additional Resources:

NCBI RefSeq record:
XM_006500381.3
NBCI Gene record:
Bcas1 (76960)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006500381.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000217561 GATGGCGTTTCTCAGACAAAT pLKO.1 1628 CDS 100% 13.200 18.480 N Bcas1 n/a
2 TRCN0000217143 CGGAAGAAAGTAACGTGAAAG pLKO.1 1681 CDS 100% 10.800 7.560 N Bcas1 n/a
3 TRCN0000192145 GAAGTAGAATCCAGCTTACAA pLKO.1 1524 CDS 100% 5.625 3.938 N Bcas1 n/a
4 TRCN0000201670 GCTAGGACTCTCCTTTAGAAA pLKO.1 1199 CDS 100% 5.625 3.938 N Bcas1 n/a
5 TRCN0000200991 CACTCGTGTAATTCAACACTA pLKO.1 293 CDS 100% 4.950 3.465 N Bcas1 n/a
6 TRCN0000190879 CCAAGGATAATGTGGCTACTT pLKO.1 343 CDS 100% 4.950 3.465 N Bcas1 n/a
7 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2188 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006500381.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.