Transcript: Mouse XM_006500915.3

PREDICTED: Mus musculus nephronectin (Npnt), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Npnt (114249)
Length:
4511
CDS:
234..1826

Additional Resources:

NCBI RefSeq record:
XM_006500915.3
NBCI Gene record:
Npnt (114249)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006500915.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000340511 ATTCCACGGCAGCCGACAAAT pLKO_005 1299 CDS 100% 13.200 18.480 N Npnt n/a
2 TRCN0000340450 GAGTCTCCTGCCCTCGATTTA pLKO_005 670 CDS 100% 13.200 18.480 N Npnt n/a
3 TRCN0000340508 ATGCCCGGTGTTACAACATAC pLKO_005 823 CDS 100% 10.800 15.120 N Npnt n/a
4 TRCN0000119314 GCCCGGTGTTACAACATACAT pLKO.1 825 CDS 100% 5.625 7.875 N Npnt n/a
5 TRCN0000340449 GTACCACTACACGAGTAATTA pLKO_005 1225 CDS 100% 0.000 0.000 N Npnt n/a
6 TRCN0000340509 GGCCTGACCTCAATCCATATT pLKO_005 2296 3UTR 100% 13.200 10.560 N Npnt n/a
7 TRCN0000119313 GCCAGAAAGAAATGGTACAAT pLKO.1 947 CDS 100% 5.625 3.938 N Npnt n/a
8 TRCN0000119316 CCAGTACCACTACACGAGTAA pLKO.1 1222 CDS 100% 4.950 3.465 N Npnt n/a
9 TRCN0000119315 GCACAGGTGCATGAACACTTT pLKO.1 443 CDS 100% 4.950 3.465 N Npnt n/a
10 TRCN0000119312 CCCTTCTGATTAAGTAATCAA pLKO.1 3075 3UTR 100% 0.563 0.394 N Npnt n/a
11 TRCN0000055960 GCACAGGTGCATGAACACTTA pLKO.1 443 CDS 100% 4.950 3.465 N NPNT n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006500915.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.