Transcript: Mouse XM_006500977.3

PREDICTED: Mus musculus dihydrolipoamide branched chain transacylase E2 (Dbt), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Dbt (13171)
Length:
3057
CDS:
371..1276

Additional Resources:

NCBI RefSeq record:
XM_006500977.3
NBCI Gene record:
Dbt (13171)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006500977.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000313446 GCCGTTACGATGGCGTCATTA pLKO_005 162 5UTR 100% 13.200 18.480 N Dbt n/a
2 TRCN0000099377 GCTTCTCTAATTTGTGGAAAT pLKO.1 1212 CDS 100% 10.800 15.120 N Dbt n/a
3 TRCN0000099379 GCTTCTCACAACATTGGGATA pLKO.1 845 CDS 100% 4.050 5.670 N Dbt n/a
4 TRCN0000317067 GCTTCTCACAACATTGGGATA pLKO_005 845 CDS 100% 4.050 5.670 N Dbt n/a
5 TRCN0000099378 CGTCATTAAGAGGCTCTATTA pLKO.1 175 5UTR 100% 13.200 10.560 N Dbt n/a
6 TRCN0000099375 CGGCTGCATTAGAAATGGTTT pLKO.1 1357 3UTR 100% 4.950 3.960 N Dbt n/a
7 TRCN0000317068 CGGCTGCATTAGAAATGGTTT pLKO_005 1357 3UTR 100% 4.950 3.960 N Dbt n/a
8 TRCN0000313512 ACCAGAAAGGAGACGTTTATA pLKO_005 1125 CDS 100% 15.000 10.500 N Dbt n/a
9 TRCN0000099376 GCGTGGAATCAAACTCTCCTT pLKO.1 727 CDS 100% 2.640 1.848 N Dbt n/a
10 TRCN0000349503 GCGTGGAATCAAACTCTCCTT pLKO_005 727 CDS 100% 2.640 1.848 N Dbt n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006500977.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.