Transcript: Mouse XM_006501488.3

PREDICTED: Mus musculus solute carrier family 44, member 5 (Slc44a5), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Slc44a5 (242259)
Length:
6446
CDS:
342..2504

Additional Resources:

NCBI RefSeq record:
XM_006501488.3
NBCI Gene record:
Slc44a5 (242259)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006501488.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000175665 GCATCCGTTCAGATGTTTAAA pLKO.1 1923 CDS 100% 15.000 21.000 N Slc44a5 n/a
2 TRCN0000194003 GCAGAGAAACCTTACTTTGTA pLKO.1 2430 CDS 100% 5.625 3.938 N Slc44a5 n/a
3 TRCN0000176041 GTCAACAAGAGATGCTTTCTA pLKO.1 2111 CDS 100% 5.625 3.938 N Slc44a5 n/a
4 TRCN0000175571 CTGAAAGTCACAGTTACAGAT pLKO.1 2151 CDS 100% 4.950 3.465 N Slc44a5 n/a
5 TRCN0000194051 GCCTACATCATGATTGCATTA pLKO.1 2070 CDS 100% 10.800 6.480 N Slc44a5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006501488.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.